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Publications
Impact of different SARS-CoV-2 assays on laboratory turnaround time.
Marquis B, Opota O, Jaton K, Greub G
J Med Microbiol. 2021 May;70(5)
Aequorin as a Useful Calcium-Sensing Reporter in <i>Candida albicans</i>.
Sanglard D
J Fungi (Basel). 2021 Apr 20;7(4)
[Fecal microbiota transplantation: from the evidence to the realty of the field].
Ballif A, Gerber S, Carrez L, Audry M, Sadeghipour F, Mitouassiwou A, Croxatto A, Opota O, Prod'hom G, Henchoz S, Schoepfer A, Cavassini M, Galpérine T
Rev Med Suisse. 2021 Apr 14;17(734):726-731
Implementing SARS-CoV-2 Rapid Antigen Testing in the Emergency Ward of a Swiss University Hospital: The INCREASE Study.
Caruana G, Croxatto A, Kampouri E, Kritikos A, Opota O, Foerster M, Brouillet R, Senn L, Lienhard R, Egli A, Pantaleo G, Carron PN, Greub G
Microorganisms. 2021 Apr 10;9(4)
Recommendations for accurate genotyping of SARS-CoV-2 using amplicon-based sequencing of clinical samples.
Kubik S, Marques AC, Xing X, Silvery J, Bertelli C, De Maio F, Pournaras S, Burr T, Duffourd Y, Siemens H, Alloui C, Song L, Wenger Y, Saitta A, Macheret M, Smith EW, Menu P, Brayer M, Steinmetz LM, Si-Mohammed A, Chuisseu J, Stevens R, Constantoulakis P,
Clin Microbiol Infect. 2021 Apr 1
Navigating the uncertainties of COVID-19 associated aspergillosis (CAPA): A comparison with influenza associated aspergillosis (IAPA).
Lamoth F, Lewis RE, Walsh TJ, Kontoyiannis DP
J Infect Dis. 2021 Mar 26
Invasive aspergillosis in solid organ transplant patients: diagnosis, prophylaxis, treatment, and assessment of response.
Neofytos D, Garcia-Vidal C, Lamoth F, Lichtenstern C, Perrella A, Vehreschild JJ
BMC Infect Dis. 2021 Mar 24;21(1):296
Assessment of the Role of 1,3-β-d-Glucan Testing for the Diagnosis of Invasive Fungal Infections in Adults.
Lamoth F, Akan H, Andes D, Cruciani M, Marchetti O, Ostrosky-Zeichner L, Racil Z, Clancy CJ
Clin Infect Dis. 2021 Mar 12;72(Supplement_2):S102-S108
Guidance on Imaging for Invasive Pulmonary Aspergillosis and Mucormycosis: From the Imaging Working Group for the Revision and Update of the Consensus Definitions of Fungal Disease from the EORTC/MSGERC.
Alexander BD, Lamoth F, Heussel CP, Prokop CS, Desai SR, Morrissey CO, Baddley JW
Clin Infect Dis. 2021 Mar 12;72(Supplement_2):S79-S88
Conservation of the glycogen metabolism pathway underlines a pivotal function of storage polysaccharides in Chlamydiae.
Colpaert M, Kadouche D, Ducatez M, Pillonel T, Kebbi-Beghdadi C, Cenci U, Huang B, Chabi M, Maes E, Coddeville B, Couderc L, Touzet H, Bray F, Tirtiaux C, Ball S, Greub G, Colleoni C
Commun Biol. 2021 Mar 5;4(1):296
Novel <i>ERG11</i> and <i>TAC1b</i> mutations associated with azole resistance in <i>Candida auris</i>.
Li J, Coste AT, Liechti M, Bachmann D, Sanglard D, Lamoth F
Antimicrob Agents Chemother. 2021 Feb 22
Pathogenic Determinants of the <i>Mycobacterium kansasii</i> Complex: An Unsuspected Role for Distributive Conjugal Transfer.
Tagini F, Pillonel T, Bertelli C, Jaton K, Greub G
Microorganisms. 2021 Feb 10;9(2)
Letter on "(1,3)-β-D-Glucan-based empirical antifungal interruption in suspected invasive candidiasis: a randomized trial".
Kritikos A, Lamoth F
Crit Care. 2021 Feb 9;25(1):55
Insights in the molecular mechanisms of an azole stress adapted laboratory-generated Aspergillus fumigatus strain.
Aruanno M, Gozel S, Mouyna I, Parker JE, Bachmann D, Flamant P, Coste AT, Sanglard D, Lamoth F
Med Mycol. 2021 Feb 7
Invasive Pulmonary Aspergillosis Goes Viral Again?
Wauters J, Lamoth F, Rijnders BJA, Calandra T
Am J Respir Crit Care Med. 2021 Feb 1;203(3):275-277
Camphor and Eucalyptol-Anticandidal Spectrum, Antivirulence Effect, Efflux Pumps Interference and Cytotoxicity.
Ivanov M, Kannan A, Stojković DS, Glamočlija J, Calhelha RC, Ferreira ICFR, Sanglard D, Soković M
Int J Mol Sci. 2021 Jan 6;22(2)
Future challenges and chances in the diagnosis and management of invasive mould infections in cancer patients.
Vehreschild JJ, Koehler P, Lamoth F, Prattes J, Rieger C, Rijnders BJA, Teschner D
Med Mycol. 2021 Jan 4;59(1):93-101
Epidemiology of sexually transmitted infections among female sex workers in Switzerland: a local, exploratory, cross-sectional study.
Vu F, Cavassini M, D'Acremont V, Greub G, Jaton K, Masserey E, Pongelli S, Bouche L, Ngarambe C, Bize R, Bodenmann P
Swiss Med Wkly. 2020 Dec 14;150:w20357
A novel circulating tamiami mammarenavirus shows potential for zoonotic spillover.
Moreno H, Rastrojo A, Pryce R, Fedeli C, Zimmer G, Bowden TA, Gerold G, Kunz S
PLoS Negl Trop Dis. 2020 Dec 28;14(12):e0009004
Nested Species Distribution Models of <i>Chlamydiales</i> in Ixodes ricinus (Tick) Hosts in Switzerland.
Rochat E, Vuilleumier S, Aeby S, Greub G, Joost S
Appl Environ Microbiol. 2020 Dec 17;87(1)
International Committee on Systematics of Prokaryotes (ICSP) Subcommittee on the taxonomy of Chlamydiae, minutes of the closed meeting, 10 September 2020, via Zoom.
Borel N, Greub G
Int J Syst Evol Microbiol. 2020 Dec 17
Premiers résultats des études vaccinales de phase 3: le tournant ?
Meylan P
Rev Med Suisse. 2020 Dec 2;16(717):2354-2355
Pneumocystis jirovecii.
Nevez G, Hauser PM, Le Gal S
Trends Microbiol. 2020 Dec;28(12):1034-1035
Chlamydia pneumoniae and Mycoplasma pneumoniae in children with Cystic Fibrosis: impact on bacterial respiratory microbiota diversity.
Pittet LF, Bertelli C, Scherz V, Rochat I, Mardegan C, Brouillet R, Jaton K, Mornand A, Kaiser L, Posfay-Barbe K, Asner SA, Greub G
Pathog Dis. 2020 Nov 28
Transcriptional Landscape of <i>Waddlia chondrophila</i> Aberrant Bodies Induced by Iron Starvation.
Ardissone S, Scherler A, Pillonel T, Martin V, Kebbi-Beghdadi C, Greub G
Microorganisms. 2020 Nov 24;8(12)
Mental health, quality of life, self-efficacy, and social support of individuals living with spinal cord injury in Switzerland compared to that of the general population.
Carrard V, Kunz S, Peter C
Spinal Cord. 2020 Nov 24
New Data on the <i>In Vitro</i> Activity of Fenticonazole against Fluconazole-Resistant <i>Candida</i> Species.
Cacaci M, Menchinelli G, Torelli R, Sanglard D, Sanguinetti M, Posteraro B
Antimicrob Agents Chemother. 2020 Nov 17;64(12)
Comparison of SARS-CoV-2 serological tests with different antigen targets.
Coste AT, Jaton K, Papadimitriou-Olivgeris M, Greub G, Croxatto A
J Clin Virol. 2020 Nov 17;134:104690
Epidemiology, risk factors and clinical course of SARS-CoV-2 infected patients in a Swiss university hospital: An observational retrospective study.
Regina J, Papadimitriou-Olivgeris M, Burger R, Le Pogam MA, Niemi T, Filippidis P, Tschopp J, Desgranges F, Viala B, Kampouri E, Rochat L, Haefliger D, Belkoniene M, Fidalgo C, Kritikos A, Jaton K, Senn L, Bart PA, Pagani JL, Manuel O, Lhopitallier L
PLoS One. 2020;15(11):e0240781
Comparison of SARS-CoV-2 RT-PCR on a high-throughput molecular diagnostic platform and the cobas SARS-CoV-2 test for the diagnostic of COVID-19 on various clinical samples.
Opota O, Brouillet R, Greub G, Jaton K
Pathog Dis. 2020 Nov 11;78(8)
Les stratégies subversives utilisées par SARS-CoV-2 pour supprimer les défenses de l’hôte.
Meylan P
Rev Med Suisse. 2020 Nov 11;16(714):2190-2191
Identification and Characterization of Mediators of Fluconazole Tolerance in <i>Candida albicans</i>.
Delarze E, Brandt L, Trachsel E, Patxot M, Pralong C, Maranzano F, Chauvel M, Legrand M, Znaidi S, Bougnoux ME, d'Enfert C, Sanglard D
Front Microbiol. 2020;11:591140
Predicting Venous Thromboembolic Events in Patients with Coronavirus Disease 2019 Requiring Hospitalization: an Observational Retrospective Study by the COVIDIC Initiative in a Swiss University Hospital.
Kampouri E, Filippidis P, Viala B, Méan M, Pantet O, Desgranges F, Tschopp J, Regina J, Karachalias E, Bianchi C, Zermatten MG, Jaton K, Qanadli SD, Bart PA, Pagani JL, Guery B, Alberio L, Papadimitriou-Olivgeris M, RegCOVID Research Group
Biomed Res Int. 2020;2020:9126148
Changes in SARS-CoV-2 Spike versus Nucleoprotein Antibody Responses Impact the Estimates of Infections in Population-Based Seroprevalence Studies.
Fenwick C, Croxatto A, Coste AT, Pojer F, André C, Pellaton C, Farina A, Campos J, Hacker D, Lau K, Bosch BJ, Gonseth Nussle S, Bochud M, D'Acremont V, Trono D, Greub G, Pantaleo G
J Virol. 2020 Nov 3
Vertical transmission and materno-fetal outcomes in 13 patients with coronavirus disease 2019.
Masmejan S, Pomar L, Favre G, Panchaud A, Giannoni E, Greub G, Baud D
Clin Microbiol Infect. 2020 Nov;26(11):1585-1587
Universal admission screening strategy for COVID-19 highlighted the clinical importance of reporting SARS-CoV-2 viral loads.
Moraz M, Jacot D, Papadimitriou-Olivgeris M, Senn L, Greub G, Jaton K, Opota O
New Microbes New Infect. 2020 Nov;38:100820
Revealing the astragalin mode of anticandidal action.
Ivanov M, Kannan A, Stojkovic D, Glamoclija J, Golic Grdadolnik S, Sanglard D, Sokovic M
EXCLI J. 2020;19:1436-1445
Que savons-nous de la transmission de SARS-CoV-2 ?
Meylan P
Rev Med Suisse. 2020 Oct 28;16(712):2078-2079
Evaluation of the performance of rapid tests for screening carriers of acquired ESBL producers and their impact on the turnaround time.
Blanc DS, Poncet F, Grandbastien B, Greub G, Senn L, Nordmann P
J Hosp Infect. 2020 Oct 24
[Myases from here and elsewhere : pseudo-furonculosis and Ignatzschineria larvae bacteremia].
Berthod D, Duss FR, Palazzuolo M, Eyer M, Onya O, Aellen S, Bettschart V, Schmid T, Greub G, Troillet N
Rev Med Suisse. 2020 Oct 14;16(710):1932-1936
Multicenter analysis of sputum microbiota in tuberculosis patients.
Sala C, Benjak A, Goletti D, Banu S, Mazza-Stadler J, Jaton K, Busso P, Remm S, Leleu M, Rougemont J, Palmieri F, Cuzzi G, Butera O, Vanini V, Kabir S, Rahman SMM, Nicod L, Cole ST
PLoS One. 2020;15(10):e0240250
Bonne réaction des personnes âgées au vaccin anti-Covid mRNA-1273 (Moderna).
Meylan P
Rev Med Suisse. 2020 Oct 7;16(709):1895
Performance evaluation of the Becton Dickinson Kiestra™ IdentifA/SusceptA.
Jacot D, Sarton-Lohéac G, Coste AT, Bertelli C, Greub G, Prod'hom G, Croxatto A
Clin Microbiol Infect. 2020 Oct 5
SARS-CoV-2 ACE-receptor detection in the placenta throughout pregnancy.
Gengler C, Dubruc E, Favre G, Greub G, de Leval L, Baud D
Clin Microbiol Infect. 2020 Oct 3
Emerging echinocandin-resistant Candida albicans and glabrata in Switzerland.
Coste AT, Kritikos A, Li J, Khanna N, Goldenberger D, Garzoni C, Zehnder C, Boggian K, Neofytos D, Riat A, Bachmann D, Sanglard D, Lamoth F, Fungal Infection Network of Switzerland (FUNGINOS).
Infection. 2020 Oct;48(5):761-766
Serum antibody response in critically ill patients with COVID-19.
Longchamp A, Longchamp J, Croxatto A, Greub G, Sanchez B, Delaloye J, Study Group.
Intensive Care Med. 2020 Oct;46(10):1921-1923
Digital microbiology.
Egli A, Schrenzel J, Greub G
Clin Microbiol Infect. 2020 Oct;26(10):1324-1331
Single-Cell Analysis Reveals Heterogeneity of Virus Infection, Pathogenicity, and Host Responses: HIV as a Pioneering Example.
Brandt L, Cristinelli S, Ciuffi A
Annu Rev Virol. 2020 Sep 29;7(1):333-350
Piperacillin/tazobactam selects an ampC derepressed E. cloacae complex mutant in a diabetic osteoarticular infection.
Moraz M, Bertelli C, Prod'hom G, Croxatto A, Greub G, Abou-Khalil S, Borens O, Meylan S
Clin Microbiol Infect. 2020 Sep 4
Whipple disease: a 15-year retrospective study on 36 patients with positive polymerase chain reaction for Tropheryma whipplei.
Duss FR, Jaton K, Vollenweider P, Troillet N, Greub G
Clin Microbiol Infect. 2020 Sep 4
Genetic predisposition and environmental factors associated with the development of atopic dermatitis in infancy: a prospective birth cohort study.
Gallay C, Meylan P, Mermoud S, Johannsen A, Lang C, Rivolta C, Christen-Zaech S
Eur J Pediatr. 2020 Sep;179(9):1367-1377
Diagnostic strategies for SARS-CoV-2 infection and interpretation of microbiological results.
Caruana G, Croxatto A, Coste AT, Opota O, Lamoth F, Jaton K, Greub G
Clin Microbiol Infect. 2020 Sep;26(9):1178-1182
A proopiomelanocortin-derived peptide sequence enhances plasma stability of peptide drugs.
Löw K, Roulin A, Kunz S
FEBS Lett. 2020 Sep;594(17):2840-2866
Parental occupational exposure to pesticides and risk of childhood cancer in Switzerland: a census-based cohort study.
Coste A, Bailey HD, Kartal-Kaess M, Renella R, Berthet A, Spycher BD
BMC Cancer. 2020 Aug 28;20(1):819
Phylogeographical Analysis Reveals the Historic Origin, Emergence, and Evolutionary Dynamics of Methicillin-Resistant <i>Staphylococcus aureus</i> ST228.
Abdelbary MMH, Feil EJ, Senn L, Petignat C, Prod'hom G, Schrenzel J, François P, Werner G, Layer F, Strommenger B, Pantosti A, Monaco M, Denis O, Deplano A, Grundmann H, Blanc DS
Front Microbiol. 2020;11:2063
Signaling Pathways Governing the Caspofungin Paradoxical Effect in Aspergillus fumigatus.
Papon N, Morio F, Sanglard D
mBio. 2020 Aug 18;11(4)
Insights into Mobile Genetic Elements of the Biocide-Degrading Bacterium <i>Pseudomonas nitroreducens</i> HBP-1.
Carraro N, Sentchilo V, Polák L, Bertelli C, van der Meer JR
Genes (Basel). 2020 Aug 12;11(8)
The Role of Receptor Tyrosine Kinases in Lassa Virus Cell Entry.
Fedeli C, Moreno H, Kunz S
Viruses. 2020 Aug 6;12(8)
Mutation dans la protéine Spike de SARS-CoV-2.
Meylan P
Rev Med Suisse. 2020 Aug 5;16(701):1470
Syndromic panels or the panels' syndrome? A perspective through the lens of respiratory tract infections: author's response.
Zanella MC, Meylan P, Kaiser L
Clin Microbiol Infect. 2020 Aug;26(8):1107-1108
Genome sequencing of Mycobacterium tuberculosis clinical isolates revealed isoniazid resistance mechanisms undetected by conventional molecular methods.
Laurent S, Zakham F, Bertelli C, Merz L, Nicod L, Mazza-Stalder J, Greub G, Jaton K, Opota O
Int J Antimicrob Agents. 2020 Aug;56(2):106068
Comparison of Whole Genome (wg-) and Core Genome (cg-) MLST (BioNumerics<sup>TM</sup>) Versus SNP Variant Calling for Epidemiological Investigation of <i>Pseudomonas aeruginosa</i>.
Blanc DS, Magalhães B, Koenig I, Senn L, Grandbastien B
Front Microbiol. 2020;11:1729
OCIAD1 is a host mitochondrial substrate of the hepatitis C virus NS3-4A protease.
Tran HTL, Morikawa K, Anggakusuma, Zibi R, Thi VLD, Penin F, Heim MH, Quadroni M, Pietschmann T, Gouttenoire J, Moradpour D
PLoS One. 2020;15(7):e0236447
Conidiobolus pachyzygosporus invasive pulmonary infection in a patient with acute myeloid leukemia: case report and review of the literature.
Stavropoulou E, Coste AT, Beigelman-Aubry C, Letovanec I, Spertini O, Lovis A, Krueger T, Burger R, Bochud PY, Lamoth F
BMC Infect Dis. 2020 Jul 22;20(1):527
Immunité cellulaire contre SARS-CoV-2 : substrat de l’immunité croisée entre coronavirus saisonniers et SARS-CoV-2 ?
Meylan P
Rev Med Suisse. 2020 Jul 15;16(700):1394
Pour un retour à un développement rationnel des traitements.
Meylan P
Rev Med Suisse. 2020 Jul 15;16(700):1388-1389
Evolution and Population Dynamics of Clonal Complex 152 Community-Associated Methicillin-Resistant <i>Staphylococcus aureus</i>.
Baig S, Rhod Larsen A, Martins Simões P, Laurent F, Johannesen TB, Lilje B, Tristan A, Schaumburg F, Egyir B, Cirkovic I, Nimmo GR, Spiliopoulou I, Blanc DS, Mernelius S, Moen AEF, David MZ, Andersen PS, Stegger M
mSphere. 2020 Jul 1;5(4)
Venous thromboembolism in critically Ill patients with COVID-19: Results of a screening study for deep vein thrombosis.
Longchamp A, Longchamp J, Manzocchi-Besson S, Whiting L, Haller C, Jeanneret S, Godio M, Garcia Martinez JJ, Bonjour T, Caillat M, Maitre G, Thaler JM, Pantet R, Donner V, Dumoulin A, Emonet S, Greub G, Friolet R, Robert-Ebadi H, Righini M, Sanchez B, Del
Res Pract Thromb Haemost. 2020 Jul;4(5):842-847
Prevalence and phylogeny of Chlamydiae and hemotropic mycoplasma species in captive and free-living bats.
Fritschi J, Marti H, Seth-Smith HMB, Aeby S, Greub G, Meli ML, Hofmann-Lehmann R, Mühldorfer K, Stokar-Regenscheit N, Wiederkehr D, Pilo P, Van Den Broek PR, Borel N
BMC Microbiol. 2020 Jun 26;20(1):182
Single yeast cell nanomotions correlate with cellular activity.
Willaert RG, Vanden Boer P, Malovichko A, Alioscha-Perez M, Radotić K, Bartolić D, Kalauzi A, Villalba MI, Sanglard D, Dietler G, Sahli H, Kasas S
Sci Adv. 2020 Jun;6(26):eaba3139
Expression pattern of the Pneumocystis jirovecii major surface glycoprotein superfamily in patients with pneumonia.
Schmid-Siegert E, Richard S, Luraschi A, Mühlethaler K, Pagni M, Hauser PM
J Infect Dis. 2020 Jun 19
Comparison of Bioinformatics Pipelines and Operating Systems for the Analyses of 16S rRNA Gene Amplicon Sequences in Human Fecal Samples.
Marizzoni M, Gurry T, Provasi S, Greub G, Lopizzo N, Ribaldi F, Festari C, Mazzelli M, Mombelli E, Salvatore M, Mirabelli P, Franzese M, Soricelli A, Frisoni GB, Cattaneo A
Front Microbiol. 2020;11:1262
Screening of <i>Chlamydia trachomatis</i> and <i>Waddlia chondrophila</i> Antibodies in Women with Tubal Factor Infertility.
van Dooremalen WTM, Verweij SP, den Hartog JE, Kebbi-Beghdadi C, Ouburg S, Greub G, Morré SA, Ammerdorffer A
Microorganisms. 2020 Jun 17;8(6)
SPHN/PHRT: Forming a Swiss-Wide Infrastructure for Data-Driven Sepsis Research.
Egli A, Battegay M, Büchler AC, Bühlmann P, Calandra T, Eckert P, Furrer H, Greub G, Jakob SM, Kaiser L, Leib SL, Marsch S, Meinshausen N, Pagani JL, Pugin J, Rätsch G, Schrenzel J, Schüpbach R, Siegemund M, Zamboni N, Zbinden R, Zinkernagel A, Borgwardt
Stud Health Technol Inform. 2020 Jun 16;270:1163-1167
Second-Trimester Miscarriage in a Pregnant Woman With SARS-CoV-2 Infection.
Baud D, Greub G, Favre G, Gengler C, Jaton K, Dubruc E, Pomar L
JAMA. 2020 Jun 2;323(21):2198-2200
On the Host Side of the Hepatitis E Virus Life Cycle.
Oechslin N, Moradpour D, Gouttenoire J
Cells. 2020 May 22;9(5)
[SARS-CoV-2, a point in the storm].
Tadini E, Papamidimitriou-Olivgeris M, Opota O, Moulin E, Lamoth F, Manuel O, Lhopitallier L, Jaton K, Croxatto A, Grandbastien B, Senn L, Guery B
Rev Med Suisse. 2020 May 6;16(692):917-923
Molecular evolution of the proopiomelanocortin system in Barn owl species.
Löw K, Ducrest AL, San-Jose LM, Simon C, Uva V, Seidah NG, Pasquato A, Kunz S, Roulin A
PLoS One. 2020;15(5):e0231163
Letter to the editor: SARS-CoV-2 detection by real-time RT-PCR.
Pillonel T, Scherz V, Jaton K, Greub G, Bertelli C
Euro Surveill. 2020 May;25(21)
Ability of quantitative PCR to discriminate <i>Pneumocystis jirovecii</i> pneumonia from colonization.
Perret T, Kritikos A, Hauser PM, Guiver M, Coste AT, Jaton K, Lamoth F
J Med Microbiol. 2020 May;69(5):705-711
2020: A new year for Medical Mycology and medical mycologists.
Coste A, Imbert C, Hennequin C
J Mycol Med. 2020 Apr;30(1):100937
Deep phenotyping, including quantitative ciliary beating parameters, and extensive genotyping in primary ciliary dyskinesia.
Blanchon S, Legendre M, Bottier M, Tamalet A, Montantin G, Collot N, Faucon C, Dastot F, Copin B, Clement A, Filoche M, Coste A, Amselem S, Escudier E, Papon JF, Louis B
J Med Genet. 2020 Apr;57(4):237-244
Invasive aspergillosis due to Aspergillus section Usti: a multicenter retrospective study.
Glampedakis E, Cassaing S, Fekkar A, Dannaoui E, Bougnoux ME, Bretagne S, Neofytos D, Schreiber PW, Hennequin C, Morio F, Shadrivova O, Bongomin F, Fernández-Ruiz M, Bellanger AP, Arikan-Akdagli S, Erard V, Aigner M, Paolucci M, Khanna N, Charpentier E, B
Clin Infect Dis. 2020 Mar 10
Eukaryotic Cell Permeabilisation to Identify New Putative Chlamydial Type III Secretion System Effectors Secreted within Host Cell Cytoplasm.
Kebbi-Beghdadi C, Pilloux L, Martin V, Greub G
Microorganisms. 2020 Mar 3;8(3)
Immunosuppressed gardener pricked by roses grows Legionella longbeachae.
Desgranges F, Coste AT, Wernly D, Dufour J, Opota O, Meylan S
Lancet. 2020 Feb 22;395(10224):604
Erratum for Kannan et al., "Comparative Genomics for the Elucidation of Multidrug Resistance in Candida lusitaniae<i>"</i>.
Kannan A, Asner SA, Trachsel E, Kelly S, Parker J, Sanglard D
mBio. 2020 Feb 11;11(1)
Combining Standard Molecular Typing and Whole Genome Sequencing to Investigate <i>Pseudomonas aeruginosa</i> Epidemiology in Intensive Care Units.
Magalhães B, Valot B, Abdelbary MMH, Prod'hom G, Greub G, Senn L, Blanc DS
Front Public Health. 2020;8:3
<i>Waddlia chondrophila</i> and Male Infertility.
Baud D, Vulliemoz N, Zapata MVM, Greub G, Vouga M, Stojanov M
Microorganisms. 2020 Jan 17;8(1)
Trimethylamine-<i>N</i>-Oxide Postprandial Response in Plasma and Urine Is Lower After Fermented Compared to Non-Fermented Dairy Consumption in Healthy Adults.
Burton KJ, Krüger R, Scherz V, Münger LH, Picone G, Vionnet N, Bertelli C, Greub G, Capozzi F, Vergères G
Nutrients. 2020 Jan 16;12(1)
[Novelties in HIV prevention and treatment in 2019].
Kampouri E, Papadimitriou-Olivgeris M, Calmy A, Ciuffi A, Cavassini M
Rev Med Suisse. 2020 Jan 15;16(676-7):92-98
Machine Learning Approach for <i>Candida albicans</i> Fluconazole Resistance Detection Using Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry.
Delavy M, Cerutti L, Croxatto A, Prod'hom G, Sanglard D, Greub G, Coste AT
Front Microbiol. 2019;10:3000
Large-scale genome mining allows identification of neutral polymorphisms and novel resistance mutations in genes involved in Candida albicans resistance to azoles and echinocandins.
Sitterlé E, Coste AT, Obadia T, Maufrais C, Chauvel M, Sertour N, Sanglard D, Puel A, D'Enfert C, Bougnoux ME
J Antimicrob Chemother. 2020 Jan 10
Burden and Timeline of Infectious Diseases in the First Year After Solid Organ Transplantation in the Swiss Transplant Cohort Study.
van Delden C, Stampf S, Hirsch HH, Manuel O, Meylan P, Cusini A, Hirzel C, Khanna N, Weisser M, Garzoni C, Boggian K, Berger C, Nadal D, Koller M, Saccilotto R, Mueller NJ, Swiss Transplant Cohort Study.
Clin Infect Dis. 2020 Jan 9
Diverse Stress-Inducing Treatments cause Distinct Aberrant Body Morphologies in the <i>Chlamydia</i>-Related Bacterium, <i>Waddlia chondrophila</i>.
Scherler A, Jacquier N, Kebbi-Beghdadi C, Greub G
Microorganisms. 2020 Jan 9;8(1)
Hepatitis E virus finds its path through the gut.
Oechslin N, Moradpour D, Gouttenoire J
Gut. 2020 Jan 8
Vitamin D deficiency is common in kidney transplant recipients, but is not associated with infections after transplantation.
Schreiber PW, Kusejko K, Bischoff-Ferrari HA, Boggian K, Bonani M, van Delden C, Enriquez N, Fehr T, Garzoni C, Hirsch HH, Hirzel C, Manuel O, Meylan P, Saleh L, Weisser M, Mueller NJ, Swiss Transplant Cohort Study (STCS).
Clin Transplant. 2020 Jan 6:e13778
Syndromic panels or "panel syndrome"? A perspective through the lens of respiratory-tract infections.
Zanella MC, Meylan P, Kaiser L
Clin Microbiol Infect. 2020 Jan 3
Clinical bioinformatics for microbial genomics and metagenomics: an ESCMID Postgraduate Technical Workshop.
Greub G, Palagi PM, Dylus D, Egli A, Pillonel T, Rossen JWA, Seth-Smith HMB, Lebrand A, ESGMD Study Group.
Microbes Infect. 2020 Nov - Dec;22(10):626-634
Viral load of SARS-CoV-2 across patients and compared to other respiratory viruses.
Jacot D, Greub G, Jaton K, Opota O
Microbes Infect. 2020 Nov - Dec;22(10):617-621
Presence and diversity of Chlamydiae bacteria in Spinturnix myoti, an ectoparasite of bats.
Thiévent K, Szentiványi T, Aeby S, Glaizot O, Christe P, Greub G
Parasite. 2020;27:54
Comparative Genomics for the Elucidation of Multidrug Resistance in Candida lusitaniae.
Kannan A, Asner SA, Trachsel E, Kelly S, Parker J, Sanglard D
mBio. 2019 Dec 24;10(6)
Herpes simplex encephalitis in adult patients with MASP-2 deficiency.
Bibert S, Piret J, Quinodoz M, Collinet E, Zoete V, Michielin O, Menasria R, Meylan P, Bihl T, Erard V, Fellmann F, Rivolta C, Boivin G, Bochud PY
PLoS Pathog. 2019 Dec;15(12):e1008168
A predation assay using amoebae to screen for virulence factors unearthed the first W. chondrophila inclusion membrane protein.
Kebbi-Beghdadi C, Pilloux L, Croxatto A, Tosetti N, Pillonel T, Greub G
Sci Rep. 2019 Dec 20;9(1):19485
Impact of <i>Waddlia chondrophila</i> infection on pregnancy in the mouse.
Baud D, Ammerdorffer A, Buffe Y, Vouga M, Greub G, Stojanov M
New Microbes New Infect. 2020 Jan;33:100619
Publisher Correction: Identification of new DNA-associated proteins from Waddlia chondrophila.
de Barsy M, Herrgott L, Martin V, Pillonel T, Viollier PH, Greub G
Sci Rep. 2019 Nov 5;9(1):16402
EPD in 2020: enhanced data visualization and extension to ncRNA promoters.
Meylan P, Dreos R, Ambrosini G, Groux R, Bucher P
Nucleic Acids Res. 2019 Nov 4
ChlamDB: a comparative genomics database of the phylum Chlamydiae and other members of the Planctomycetes-Verrucomicrobiae-Chlamydiae superphylum.
Pillonel T, Tagini F, Bertelli C, Greub G
Nucleic Acids Res. 2019 Oct 30
Evaluation of the BD Phoenix™ CPO detect test for detection of carbapenemase producers.
Croxatto A, Coste AT, Pillonel T, Bertelli C, Greub G, Prod'hom G
Clin Microbiol Infect. 2019 Oct 18
International Committee on Systematics of Prokaryotes (ICSP) Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 20 March 2019, Seattle, WA, USA.
Borel N, Horn M, Greub G
Int J Syst Evol Microbiol. 2019 Oct 8
Reply to Nevez and Le Gal, "Caspofungin and <i>Pneumocystis</i> Pneumonia: It Is Time To Go Ahead".
Luraschi A, Richard S, Hauser PM
Antimicrob Agents Chemother. 2019 Oct;63(10)
Phenotypic, biochemical and genetic analysis of KPC-41, a KPC-3 variant conferring resistance to ceftazidime-avibactam and exhibiting reduced carbapenemase activity.
Mueller L, Masseron A, Prod'Hom G, Galperine T, Greub G, Poirel L, Nordmann P
Antimicrob Agents Chemother. 2019 Sep 16
Symposium report: One Health meets sequencing.
Egli A, Koch D, Danuser J, Hendriksen RS, Driesen S, Schmid DC, Neher R, Mäusezahl M, Seth-Smith HMB, Bloemberg G, Tschudin-Sutter S, Endimiani A, Perreten V, Greub G, Schrenzel J, Stephan R
Microbes Infect. 2019 Aug 8
Recombinant Hepatitis E Viruses Harboring Tags in the ORF1 Protein.
Szkolnicka D, Pollán A, Da Silva N, Oechslin N, Gouttenoire J, Moradpour D
J Virol. 2019 Jul 17
A SpoIID Homolog Cleaves Glycan Strands at the Chlamydial Division Septum.
Jacquier N, Yadav AK, Pillonel T, Viollier PH, Cava F, Greub G
MBio. 2019 Jul 16;10(4)
Expression and Immunostaining Analyses Suggest that <i>Pneumocystis</i> Primary Homothallism Involves Trophic Cells Displaying Both Plus and Minus Pheromone Receptors.
Luraschi A, Richard S, Almeida JMGCF, Pagni M, Cushion MT, Hauser PM
MBio. 2019 Jul 9;10(4)
A novel cell-based sensor detecting the activity of individual basic proprotein convertases.
Löw K, Hardes K, Fedeli C, Seidah NG, Constam DB, Pasquato A, Steinmetzer T, Roulin A, Kunz S
FEBS J. 2019 Jul 5
Comparison of the innate immune response to pathogenic and non-pathogenic Clade B New World arenaviruses.
Moreno H, Möller R, Fedeli C, Gerold G, Kunz S
J Virol. 2019 Jul 3
Whole-genome sequencing for rapid, reliable and routine investigation of <i>Mycobacterium tuberculosis</i> transmission in local communities.
Zakham F, Laurent S, Esteves Carreira AL, Corbaz A, Bertelli C, Masserey E, Nicod L, Greub G, Jaton K, Mazza-Stalder J, Opota O
New Microbes New Infect. 2019 Sep;31:100582
Compassionate Use of Letermovir in a 2-Year-Old Immunocompromised Child With Resistant Cytomegalovirus Disease.
Pérez Marín M, Decosterd LA, Andre P, Buclin T, Mercier T, Murray K, Rizzi M, Meylan P, Jaton-Ogay P, Opota O, Gengler C, Perez MH, Natterer J, Asner SA
J Pediatric Infect Dis Soc. 2019 Jun 11
Sofosbuvir add-on to ribavirin for chronic hepatitis E in a cirrhotic liver transplant recipient: a case report.
Fraga M, Gouttenoire J, Sahli R, Chtioui H, Marcu C, Pascual M, Moradpour D, Vionnet J
BMC Gastroenterol. 2019 May 24;19(1):76
ESCMID/ESGMD postgraduate technical workshop on diagnostic microbiology.
Scherler A, Ardissone S, Moran-Gilad J, Greub G
Microbes Infect. 2019 May 16
International Committee on Systematics of Prokaryotes (ICSP) Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 5 July 2018, Woudschoten, Zeist, The Netherlands.
Borel N, Greub G
Int J Syst Evol Microbiol. 2019 May 7
Link between heat shock protein 90 (Hsp90) and the mitochondrial respiratory chain in the caspofungin stress response of <i>Aspergillus fumigatus</i>.
Aruanno M, Bachmann D, Sanglard D, Lamoth F
Antimicrob Agents Chemother. 2019 May 6
Impact of co-amoxicillin-resistant Escherichia coli and Pseudomonas aeruginosa on the rate of infectious complications in paediatric complicated appendicitis.
Andrey V, Crisinel PA, Prod'hom G, Croxatto A, Joseph JM
Swiss Med Wkly. 2019 Apr 22;149:w20055
Evaluation of three consecutive versions of a commercial rapid PCR test to screen for methicillin-resistant Staphylococcus aureus.
Bulliard E, Grandbastien B, Senn L, Greub G, Blanc DS
Clin Microbiol Infect. 2019 Apr 10
Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.
Tagini F, Aeby S, Bertelli C, Droz S, Casanova C, Prod'hom G, Jaton K, Greub G
Int J Syst Evol Microbiol. 2019 Apr 4
Sequencing the Obligate Intracellular Rhabdochlamydia helvetica within Its Tick Host Ixodes ricinus to Investigate Their Symbiotic Relationship.
Pillonel T, Bertelli C, Aeby S, de Barsy M, Jacquier N, Kebbi-Beghdadi C, Mueller L, Vouga M, Greub G
Genome Biol Evol. 2019 Apr 1;11(4):1334-1344
The rapid molecular test Xpert MTB/RIF Ultra: towards improved tuberculosis diagnosis and rifampicin resistance detection.
Opota O, Mazza-Stalder J, Greub G, Jaton K
Clin Microbiol Infect. 2019 Mar 27
Dynamic Dystroglycan Complexes Mediate Cell Entry of Lassa Virus.
Herrador A, Fedeli C, Radulovic E, Campbell KP, Moreno H, Gerold G, Kunz S
MBio. 2019 Mar 26;10(2)
Entry of Polarized Effector Cells into Quiescence Forces HIV Latency.
Dobrowolski C, Valadkhan S, Graham AC, Shukla M, Ciuffi A, Telenti A, Karn J
MBio. 2019 Mar 26;10(2)
Identification of new DNA-associated proteins from Waddlia chondrophila.
Barsy M, Herrgott L, Martin V, Pillonel T, Viollier PH, Greub G
Sci Rep. 2019 Mar 20;9(1):4885
Whole-genome sequencing revealed independent emergence of vancomycin-resistant Enterococcus faecium causing sequential outbreaks over 3 years in a tertiary care hospital.
Abdelbary MHH, Senn L, Greub G, Chaillou G, Moulin E, Blanc DS
Eur J Clin Microbiol Infect Dis. 2019 Mar 19
High-Quality Complete Genome Sequences of Three Pseudomonas aeruginosa Isolates Retrieved from Patients Hospitalized in Intensive Care Units.
Magalhães B, Senn L, Blanc DS
Microbiol Resour Announc. 2019 Feb;8(9)
Persistence of <i>Candida albicans</i> in the Oral Mucosa Induces a Curbed Inflammatory Host Response That Is Independent of Immunosuppression.
Kirchner FR, Littringer K, Altmeier S, Tran VDT, Schönherr F, Lemberg C, Pagni M, Sanglard D, Joller N, LeibundGut-Landmann S
Front Immunol. 2019;10:330
Rabbit HEV in immunosuppressed patients with hepatitis E acquired in Switzerland.
Sahli R, Fraga M, Semela D, Moradpour D, Gouttenoire J
J Hepatol. 2019 Feb 22
Macropinocytosis contributes to hantavirus entry into human airway epithelial cells.
Torriani G, Mayor J, Zimmer G, Kunz S, Rothenberger S, Engler O
Virology. 2019 Feb 21;531:57-68
Molecular diagnosis and enrichment culture identified a septic pseudoarthrosis due to an infection with Erysipelatoclostridium ramosum.
Zakham F, Pillonel T, Brunel AS, Zambelli PY, Greub G, Croxatto A, Bertelli C
Int J Infect Dis. 2019 Feb 14
Supporting female scientists in Yemen.
Zakham F, Jaton K
Lancet. 2019 Feb 9;393(10171):526-527
Investigating Antifungal Susceptibility in <i>Candida</i> Species With MALDI-TOF MS-Based Assays.
Delavy M, Dos Santos AR, Heiman CM, Coste AT
Front Cell Infect Microbiol. 2019;9:19
Finding the needle in a haystack: Mapping antifungal drug resistance in fungal pathogen by genomic approaches.
Sanglard D
PLoS Pathog. 2019 Jan;15(1):e1007478
Human papillomavirus genotype distribution and socio-behavioural characteristics in women with cervical pre-cancer and cancer at the start of a human papillomavirus vaccination programme: the CIN3+ plus study.
Egli-Gany D, Spaar Zographos A, Diebold J, Masserey Spicher V, Frey Tirri B, Heusser R, Dillner J, Petignat P, Sahli R, Low N, CIN3+plus study group.
BMC Cancer. 2019 Jan 30;19(1):111
Molecular epidemiology of Clostridioides (previously Clostridium) difficile isolates from a university hospital in Minas Gerais, Brazil.
Diniz AN, de Oliveira Júnior CA, Vilela EG, Pereira Figueiredo HC, Rupnik M, Wilcox MH, Fawley WN, Blanc DS, Faria Lobato FC, Silveira Silva RO
Anaerobe. 2019 Jan 28
Is the unique camouflage strategy of Pneumocystis associated with its particular niche within host lungs?
Hauser PM
PLoS Pathog. 2019 Jan;15(1):e1007480
Proteo-Transcriptomic Dynamics of Cellular Response to HIV-1 Infection.
Golumbeanu M, Desfarges S, Hernandez C, Quadroni M, Rato S, Mohammadi P, Telenti A, Beerenwinkel N, Ciuffi A
Sci Rep. 2019 Jan 18;9(1):213
Identification of clotrimazole-derivatives as specific inhibitors of Arenavirus fusion.
Torriani G, Trofimenko E, Mayor J, Fedeli C, Moreno H, Michel S, Heulot M, Chevalier N, Zimmer G, Shrestha N, Plattet P, Engler O, Rothenberger S, Widmann C, Kunz S
J Virol. 2019 Jan 9
[Diagnosis, prevention and treatment of HIV : what's new in 2018 ?]
D'Incau S, Viala B, Ciuffi A, Cavassini M, Calmy A
Rev Med Suisse. 2019 Jan 9;15(N° 632-633):107-112
Discovery and Characterization of Mycobacterium basilienset sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs.
Seth-Smith HMB, Imkamp F, Tagini F, Cuénod A, Hömke R, Jahn K, Tschacher A, Grendelmeier P, Bättig V, Erb S, Reinhard M, Rütimann G, Borrell S, Gagneux S, Casanova C, Droz S, Osthoff M, Tamm M, Nübel U, Greub G, Keller PM, Egli A
Front Microbiol. 2018;9:3184
Comparison of analytical performances of the Roche Cobas 6800 CT/NG assay with the Abbott m2000 Real Time CT/NG assay for detecting Chlamydia trachomatis and Neisseria gonorrhoeae.
Cherkaoui A, Renzi G, Mombelli M, Jaton K, Yerly S, Vuilleumier N, Schrenzel J
J Med Microbiol. 2019 Jan 3
Review of the impact of MALDI-TOF MS in public health and hospital hygiene, 2018.
Rodríguez-Sánchez B, Cercenado E, Coste AT, Greub G
Euro Surveill. 2019 Jan;24(4)
Diagnostic stewardship: are we using the right term?
Dyar OJ, Moran-Gilad J, Greub G, Pulcini C, ESGMD Executive Committee and the ESGAP Executive Committee.
Clin Microbiol Infect. 2018 Dec 27
Human papilloma virus-associated squamous cell carcinoma of the larynx in an 18-year-old woman.
Hotz MA, Christen B, Sahli R, Arnold AM
Head Neck. 2018 Dec 27
Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform.
Egli A, Blanc DS, Greub G, Keller PM, Lazarevic V, Lebrand A, Leib S, Neher RA, Perreten V, Ramette A, Schrenzel J, Stephan R, Wagner K, Wuethrich D, Xenarios I
Swiss Med Wkly. 2018 Dec 3;148:w14693
Added-value of Xpert MTB/RIF Ultra for the diagnosis of pulmonary tuberculosis in a low prevalence setting.
Opota O, Zakham F, Mazza-Stalder J, Nicod L, Greub G, Jaton K
J Clin Microbiol. 2018 Dec 12
Palmitoylation mediates membrane association of hepatitis E virus ORF3 protein and is required for infectious particle secretion.
Gouttenoire J, Pollán A, Abrami L, Oechslin N, Mauron J, Matter M, Oppliger J, Szkolnicka D, Dao Thi VL, van der Goot FG, Moradpour D
PLoS Pathog. 2018 Dec;14(12):e1007471
Is sex necessary for the proliferation and transmission of Pneumocystis?
Hauser PM, Cushion MT
PLoS Pathog. 2018 Dec;14(12):e1007409
Glycogen Synthase Kinase 3β Enhances Hepatitis C Virus Replication by Supporting miR-122.
Saleh M, Rüschenbaum S, Welsch C, Zeuzem S, Moradpour D, Gouttenoire J, Lange CM
Front Microbiol. 2018;9:2949
Indication of spatially random occurrence of Chlamydia-like organisms in Bufo bufo tadpoles from ponds located in the Geneva metropolitan area.
Vajana E, Widmer I, Rochat E, Duruz S, Selmoni O, Vuilleumier S, Aeby S, Greub G, Joost S
New Microbes New Infect. 2019 Jan;27:54-63
Antibodies to Chlamydia trachomatis and reproductive health issues in women with SLE: a case-control study.
Santos A, Greub G, Aeby S, Wunder D, Pantaleo G, Ribi C
Lupus Sci Med. 2018;5(1):e000293
Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis.
Tran VDT, Moretti S, Coste AT, Amorim-Vaz S, Sanglard D, Pagni M
Bioinformatics. 2018 Nov 16
Limited added value of fungal ITS amplicon sequencing in the study of bovine abortion.
Vidal S, Brandt BW, Dettwiler M, Abril C, Bressan J, Greub G, Frey CF, Perreten V, Rodriguez-Campos S
Heliyon. 2018 Nov;4(11):e00915
Genomics and evolution of Pneumocystis species.
Cissé OH, Hauser PM
Infect Genet Evol. 2018 Nov;65:308-320
Accuracy of Sensititre YeastOne echinocandins epidemiological cut-off values for identification of FKS mutant Candida albicans and Candida glabrata: a ten year national survey of the Fungal Infection Network of Switzerland (FUNGINOS).
Kritikos A, Neofytos D, Khanna N, Schreiber PW, Boggian K, Bille J, Schrenzel J, Mühlethaler K, Zbinden R, Bruderer T, Goldenberger D, Pfyffer G, Conen A, Van Delden C, Zimmerli S, Sanglard D, Bachmann D, Marchetti O, Lamoth F, Fungal Infection Network of
Clin Microbiol Infect. 2018 Nov;24(11):1214.e1-1214.e4
Efficacy of antifungal monotherapies and combinations against Aspergillus calidoustus.
Glampedakis E, Coste AT, Aruanno M, Bachmann D, Delarze E, Erard V, Lamoth F
Antimicrob Agents Chemother. 2018 Oct 15
Host-pathogen biotic interactions shaped vitamin K metabolism in Archaeplastida.
Cenci U, Qiu H, Pillonel T, Cardol P, Remacle C, Colleoni C, Kadouche D, Chabi M, Greub G, Bhattacharya D, Ball SG
Sci Rep. 2018 Oct 15;8(1):15243
ESCCAR international Congress on Rickettsiae and other Intracellular Bacteria.
Fournier PE, Beghdadi CK, Greub G
Microbes Infect. 2018 Aug - Sep;20(7-8):392-400
International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 7 September 2016, Oxford, UK.
Greub G, Bavoil P
Int J Syst Evol Microbiol. 2018 Nov;68(11):3683-3684
Metagenomic Analysis of Fish-Associated Ca. Parilichlamydiaceae Reveals Striking Metabolic Similarities to the Terrestrial Chlamydiaceae.
Taylor-Brown A, Pillonel T, Greub G, Vaughan L, Nowak B, Polkinghorne A
Genome Biol Evol. 2018 Oct 1;10(10):2587-2595
Differential modulation of hepatitis C virus replication and innate immune pathways by synthetic calcitriol-analogs.
Saleh M, Welsch C, Cai C, Döring C, Gouttenoire J, Friedrich J, Haselow K, Sarrazin C, Badenhoop K, Moradpour D, Zeuzem S, Rueschenbaum S, Lange CM
J Steroid Biochem Mol Biol. 2018 Oct;183:142-151
Late Lyme neuroborreliosis with chronic encephalomyelitis.
Beuchat I, Dunet V, Meylan P, Du Pasquier R
Neurology. 2018 Sep 25;91(13):627-628
Site-directed mutagenesis of the 1,3-β glucan synthase catalytic subunit of Pneumocystis jirovecii and susceptibility assays suggest its sensitivity to caspofungin.
Luraschi A, Richard S, Hauser PM
Antimicrob Agents Chemother. 2018 Sep 24
Implications of the "EUCAST trailing" phenomenon in C. tropicalis for the in vivo susceptibility in invertebrate and murine models.
Astvad K, Sanglard D, Delarze E, Hare RK, Arendrup MC
Antimicrob Agents Chemother. 2018 Sep 17
[Chlamydial infections : epidemiology, pathogenesis, diagnosis and treatments].
Tagini F, Greub G
Rev Med Suisse. 2018 Sep 12;14(618):1620-1625
Prevalence of Anaplasma phagocytophilum and Coxiella burnetii in Ixodes ricinus ticks in Switzerland: an underestimated epidemiologic risk.
Pilloux L, Baumgartner A, Jaton K, Lienhard R, Ackermann-Gäumann R, Beuret C, Greub G
New Microbes New Infect. 2019 Jan;27:22-26
Induction of paracrine signaling in metastatic melanoma cells by PPARγ agonist rosiglitazone activates stromal cells and enhances tumor growth.
Pich C, Meylan P, Mastelic-Gavillet B, Nguyen NT, Loyon R, Trang BK, Moser H, Moret C, Goepfert C, Hafner J, Levesque MP, Romero P, Jandus C, Michalik L
Cancer Res. 2018 Nov 15;78(22):6447-6461
Chlamydia, rickettsia and other intracellular bacteria.
Greub G
Microbes Infect. 2018 Aug - Sep;20(7-8):391
Male infertility: the intracellular bacterial hypothesis.
Stojanov M, Baud D, Greub G, Vulliemoz N
New Microbes New Infect. 2018 Nov;26:37-41
Distinct Genomic Features Characterize Two Clades of Corynebacterium diphtheriae: Proposal of Corynebacterium diphtheriae Subsp. diphtheriae Subsp. nov. and Corynebacterium diphtheriae
Tagini F, Pillonel T, Croxatto A, Bertelli C, Koutsokera A, Lovis A, Greub G
Front Microbiol. 2018;9:1743
Vitamin D status and risk of infections after liver transplantation in the Swiss Transplant Cohort Study.
Schreiber PW, Bischoff-Ferrari HA, Boggian K, van Delden C, Enriquez N, Fehr T, Garzoni C, Hirsch HH, Hirzel C, Manuel O, Meylan P, Saleh L, Weisser M, Mueller NJ, Swiss Transplant Cohort Study (STCS).
Transpl Int. 2018 Aug 12
A VP1 mutation acquired during an enterovirus 71 disseminated infection confers heparan sulfate binding ability and modulates ex vivo tropism.
Tseligka ED, Sobo K, Stoppini L, Cagno V, Abdul F, Piuz I, Meylan P, Huang S, Constant S, Tapparel C
PLoS Pathog. 2018 Aug;14(8):e1007190
Genomic characterisation of an international Pseudomonas aeruginosa reference panel indicates that the two major groups draw upon distinct mobile gene pools.
Freschi L, Bertelli C, Jeukens J, Moore MP, Kukavica-Ibrulj I, Emond-Rheault JG, Hamel J, Fothergill JL, Tucker NP, McClean S, Klockgether J, de Soyza A, Brinkman FSL, Levesque RC, Winstanley C
FEMS Microbiol Lett. 2018 Jul 1;365(14)
β-Klotho deficiency shifts the gut-liver bile acid axis and induces hepatic alterations in mice.
Somm E, Henry H, Bruce SJ, Bonnet N, Montandon SA, Niederländer NJ, Messina A, Aeby S, Rosikiewicz M, Fajas L, Sempoux C, Ferrari SL, Greub G, Pitteloud N
Am J Physiol Endocrinol Metab. 2018 Jun 26
Novel Insights into Cell Entry of Emerging Human Pathogenic Arenaviruses.
Fedeli C, Moreno H, Kunz S
J Mol Biol. 2018 Jun 22;430(13):1839-1852
Dissemination of antibiotic resistance genes associated with the sporobiota in sediments impacted by wastewater.
Paul C, Bayrychenko Z, Junier T, Filippidou S, Beck K, Bueche M, Greub G, Bürgmann H, Junier P
PeerJ. 2018;6:e4989
Clinical characteristics, audiological and neurodevelopmental outcomes of newborns with congenital cytomegalovirus infection.
Kobas M, Bickle Graz M, Truttmann AC, Giannoni E, Meylan P, Asner SA
Swiss Med Wkly. 2018;148:w14627
How to: identify non-tuberculous Mycobacterium species using MALDI-TOF mass spectrometry.
Alcaide F, Amlerová J, Bou G, Ceyssens PJ, Coll P, Corcoran D, Fangous MS, González-Álvarez I, Gorton R, Greub G, Hery-Arnaud G, Hrábak J, Ingebretsen A, Lucey B, Marekoviċ I, Mediavilla-Gradolph C, Monté MR, O'Connor J, O'Mahony J, Opota O, O'Reilly B, O
Clin Microbiol Infect. 2018 Jun;24(6):599-603
Role of bi-weekly serum galactomannan screening for the diagnosis of invasive aspergillosis in haematological cancer patients.
Couchepin J, Brunel AS, Jaton K, Meylan P, Bochud PY, Lamoth F
Mycoses. 2018 Jun;61(6):350-354
Resistome Analysis of a Carbapenemase (OXA-48)-Producing and Colistin-Resistant Klebsiella pneumoniae Strain.
Pillonel T, Nordmann P, Bertelli C, Prod' Hom G, Poirel L, Greub G
Antimicrob Agents Chemother. 2018 May;62(5)
Single-Cell RNA-Seq Reveals Transcriptional Heterogeneity in Latent and Reactivated HIV-Infected Cells.
Golumbeanu M, Cristinelli S, Rato S, Munoz M, Cavassini M, Beerenwinkel N, Ciuffi A
Cell Rep. 2018 Apr 24;23(4):942-950
Hepatitis E virus as a cause of acute hepatitis acquired in Switzerland.
Fraga M, Doerig C, Moulin H, Bihl F, Brunner F, Müllhaupt B, Ripellino P, Semela D, Stickel F, Terziroli Beretta-Piccoli B, Aubert V, Telenti A, Greub G, Sahli R, Moradpour D
Liver Int. 2018 Apr;38(4):619-626
Evaluating the use of whole-genome sequencing for outbreak investigations in the lack of closely related reference genome.
Abdelbary MMH, Senn L, Moulin E, Prod'hom G, Croxatto A, Greub G, Blanc DS
Infect Genet Evol. 2018 Apr;59:1-6
Detection of respiratory bacterial pathogens causing atypical pneumonia by multiplex Lightmix RT-PCR.
Wagner K, Springer B, Imkamp F, Opota O, Greub G, Keller PM
Int J Med Microbiol. 2018 Apr;308(3):317-323
The use of single-cell RNA-Seq to understand virus-host interactions.
Cristinelli S, Ciuffi A
Curr Opin Virol. 2018 Apr;29:39-50
Clinical significance of post-prophylaxis cytomegalovirus infection in lung transplant recipients.
Jaamei N, Koutsokera A, Pasquier J, Mombelli M, Meylan P, Pascual M, Aubert JD, Manuel O
Transpl Infect Dis. 2018 Aug;20(4):e12893
Azole Resistance of Environmental and Clinical Aspergillus fumigatus Isolates from Switzerland.
Riat A, Plojoux J, Gindro K, Schrenzel J, Sanglard D
Antimicrob Agents Chemother. 2018 Apr;62(4)
Burden of severe RSV disease among immunocompromised children and adults: a 10 year retrospective study.
Chatzis O, Darbre S, Pasquier J, Meylan P, Manuel O, Aubert JD, Beck-Popovic M, Masouridi-Levrat S, Ansari M, Kaiser L, Posfay-Barbe KM, Asner SA
BMC Infect Dis. 2018 Mar 6;18(1):111
Impact of the 2014-2015 influenza season on the activity of an academic emergency department.
Beysard N, Yersin B, Meylan P, Hugli O, Carron PN
Intern Emerg Med. 2018 Mar;13(2):251-256
Global emergence of the widespread Pseudomonas aeruginosa ST235 clone.
Treepong P, Kos VN, Guyeux C, Blanc DS, Bertrand X, Valot B, Hocquet D
Clin Microbiol Infect. 2018 Mar;24(3):258-266
Functional and Expression Analyses of the Pneumocystis MAT Genes Suggest Obligate Sexuality through Primary Homothallism within Host Lungs.
Richard S, Almeida JMGCF, Cissé OH, Luraschi A, Nielsen O, Pagni M, Hauser PM
MBio. 2018 Feb 20;9(1)
Environmental Metagenomic Assemblies Reveal Seven New Highly Divergent Chlamydial Lineages and Hallmarks of a Conserved Intracellular Lifestyle.
Pillonel T, Bertelli C, Greub G
Front Microbiol. 2018;9:79
Axl Can Serve as Entry Factor for Lassa Virus Depending on the Functional Glycosylation of Dystroglycan.
Fedeli C, Torriani G, Galan-Navarro C, Moraz ML, Moreno H, Gerold G, Kunz S
J Virol. 2018 Mar 1;92(5)
Pan-Genotype Hepatitis E Virus Replication in Stem Cell-Derived Hepatocellular Systems.
Wu X, Dao Thi VL, Liu P, Takacs CN, Xiang K, Andrus L, Gouttenoire J, Moradpour D, Rice CM
Gastroenterology. 2018 Feb;154(3):663-674.e7
Klebsiella pneumoniae co-producing KPC and RmtG, finally targeting Switzerland.
Mancini S, Poirel L, Corthesy M, Greub G, Nordmann P
Diagn Microbiol Infect Dis. 2018 Feb;90(2):151-152
Retrospective study of rapamycin or rapalog 0·1% cream for facial angiofibromas in tuberous sclerosis complex: evaluation of treatment effectiveness and cost.
Norrenberg S, Masconi M, Karamanou M, Meylan P, Golaz R, Christen-Zaech S
Br J Dermatol. 2018 Jul;179(1):208-209
Clostridium difficile infection is associated with graft loss in solid organ transplant recipients.
Cusini A, Béguelin C, Stampf S, Boggian K, Garzoni C, Koller M, Manuel O, Meylan P, Mueller NJ, Hirsch HH, Weisser M, Berger C, van Delden C, Swiss Transplant Cohort Study.
Am J Transplant. 2018 Jul;18(7):1745-1754
Bone metabolism dynamics in the early post-transplant period following kidney and liver transplantation.
Schreiber PW, Bischoff-Ferrari HA, Boggian K, Bonani M, van Delden C, Enriquez N, Fehr T, Garzoni C, Hirsch HH, Hirzel C, Manuel O, Meylan P, Saleh L, Weisser M, Mueller NJ, Swiss Transplant Cohort Study (STCS).
PLoS One. 2018;13(1):e0191167
Chlamydiae in febrile children with respiratory tract symptoms and age-matched controls, Ghana.
Bühl H, Eibach D, Nagel M, Greub G, Borel N, Sarpong N, Rettig T, Pesch T, Aeby S, Klöckner A, Brunke M, Krannich S, Kreuels B, Owusu-Dabo E, Hogan B, May J, Henrichfreise B
New Microbes New Infect. 2018 Mar;22:44-48
Azole resistance in a Candida albicans mutant lacking the ABC transporter CDR6/ROA1 depends on TOR signaling.
Khandelwal NK, Chauhan N, Sarkar P, Esquivel BD, Coccetti P, Singh A, Coste AT, Gupta M, Sanglard D, White TC, Chauvel M, d'Enfert C, Chattopadhyay A, Gaur NA, Mondal AK, Prasad R
J Biol Chem. 2018 Jan 12;293(2):412-432
A historical legacy of antibiotic utilization on bacterial seed banks in sediments.
Madueño L, Paul C, Junier T, Bayrychenko Z, Filippidou S, Beck K, Greub G, Bürgmann H, Junier P
PeerJ. 2018;6:e4197
International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 9 April 2017, Charlotte, USA.
Borel N, Bavoil P, Greub G, Horn M
Int J Syst Evol Microbiol. 2018 Jan;68(1):3369-3370
A standardized toolkit for genetic engineering of CTG clade yeasts.
Defosse TA, Courdavault V, Coste AT, Clastre M, de Bernonville TD, Godon C, Vandeputte P, Lanoue A, Touzé A, Linder T, Droby S, Rosa CA, Sanglard D, d'Enfert C, Bouchara JP, Giglioli-Guivarc'h N, Papon N
J Microbiol Methods. 2018 Jan;144:152-156
Waddlia chondrophila, a Chlamydia-related bacterium, has a negative impact on human spermatozoa.
Baud D, Vulliemoz N, Ammerdorffer A, Gyger J, Greub G, Castella V, Stojanov M
Hum Reprod. 2018 Jan 1;33(1):3-10
Identification of GBF1 as a cellular factor required for hepatitis E virus RNA replication.
Farhat R, Ankavay M, Lebsir N, Gouttenoire J, Jackson CL, Wychowski C, Moradpour D, Dubuisson J, Rouillé Y, Cocquerel L
Cell Microbiol. 2018 Jan;20(1)
Studies of Lassa Virus Cell Entry.
Pasquato A, Fernandez AH, Kunz S
Methods Mol Biol. 2018;1604:135-155
Impact of HPV vaccination with Gardasil® in Switzerland.
Jacot-Guillarmod M, Pasquier J, Greub G, Bongiovanni M, Achtari C, Sahli R
BMC Infect Dis. 2017 Dec 22;17(1):790
Insight in the biology of Chlamydia-related bacteria.
Bayramova F, Jacquier N, Greub G
Microbes Infect. 2018 Aug - Sep;20(7-8):432-440
Neglected zoonotic agents in cattle abortion: tackling the difficult to grow bacteria.
Vidal S, Kegler K, Greub G, Aeby S, Borel N, Dagleish MP, Posthaus H, Perreten V, Rodriguez-Campos S
BMC Vet Res. 2017 Dec 2;13(1):373
Oxidation-sensitive polymersomes as vaccine nanocarriers enhance humoral responses against Lassa virus envelope glycoprotein.
Galan-Navarro C, Rincon-Restrepo M, Zimmer G, Ollmann Saphire E, Hubbell JA, Hirosue S, Swartz MA, Kunz S
Virology. 2017 Dec;512:161-171
Blood lactose after dairy product intake in healthy men.
Pimentel G, Burton KJ, Rosikiewicz M, Freiburghaus C, von Ah U, Münger LH, Pralong FP, Vionnet N, Greub G, Badertscher R, Vergères G
Br J Nutr. 2017 Dec;118(12):1070-1077
Skin Colonization by Staphylococcus aureus Precedes the Clinical Diagnosis of Atopic Dermatitis in Infancy.
Meylan P, Lang C, Mermoud S, Johannsen A, Norrenberg S, Hohl D, Vial Y, Prod'hom G, Greub G, Kypriotou M, Christen-Zaech S
J Invest Dermatol. 2017 Dec;137(12):2497-2504
HPV-negative CIN3 and cervical cancer in Switzerland: any evidence of impact on screening policies?
Vassilakos P, Tran PL, Sahli R, Low N, Petignat P
Swiss Med Wkly. 2017;147:w14559
Chlamydiales, Anaplasma and Bartonella: persistence and immune escape of intracellular bacteria.
Scherler A, Jacquier N, Greub G
Microbes Infect. 2018 Aug - Sep;20(7-8):416-423
Internal quality assurance in diagnostic microbiology: A simple approach for insightful data.
Scherz V, Durussel C, Greub G
PLoS One. 2017;12(11):e0187263
Breaking the Barrier: Host Cell Invasion by Lujo Virus.
Kunz S, de la Torre JC
Cell Host Microbe. 2017 Nov 8;22(5):583-585
Microbiote, médecine de précision et microbiologie.
Schrenzel J, Greub G
Rev Med Suisse. 2017 Nov 8;13(582):1958
Mechanisms of Surface Antigenic Variation in the Human Pathogenic Fungus <i>Pneumocystis jirovecii</i>.
Schmid-Siegert E, Richard S, Luraschi A, Mühlethaler K, Pagni M, Hauser PM
MBio. 2017 Nov 7;8(6)
Genomics of the new species Kingella negevensis: diagnostic issues and identification of a locus encoding a RTX toxin.
Opota O, Laurent S, Pillonel T, Léger M, Trachsel S, Prod'hom G, Jaton K, Greub G
Microbes Infect. 2017 Nov;19(11):546-552
Unravelling HIV-1 Latency, One Cell at a Time.
Kok YL, Ciuffi A, Metzner KJ
Trends Microbiol. 2017 Nov;25(11):932-941
Bacterial genome sequencing in clinical microbiology: a pathogen-oriented review.
Tagini F, Greub G
Eur J Clin Microbiol Infect Dis. 2017 Nov;36(11):2007-2020
Single-cell analysis identifies cellular markers of the HIV permissive cell.
Rato S, Rausell A, Muñoz M, Telenti A, Ciuffi A
PLoS Pathog. 2017 Oct;13(10):e1006678
Culture-independent genome sequencing of Coxiella burnetii from a native heart valve of a Tunisian patient with severe infective endocarditis.
Delaloye J, Pillonel T, Smaoui M, Znazen A, Abid L, Greub G
New Microbes New Infect. 2018 Jan;21:31-35
A new equine and zoonotic threat emerges from an old avian pathogen, Chlamydia psittaci.
Polkinghorne A, Greub G
Clin Microbiol Infect. 2017 Oct;23(10):693-694
Cedratvirus lausannensis - digging into Pithoviridae diversity.
Bertelli C, Mueller L, Thomas V, Pillonel T, Jacquier N, Greub G
Environ Microbiol. 2017 Oct;19(10):4022-4034
CAPNOCYTOPHAGA CANIMORSUS ENDOPHTHALMITIS AFTER CATARACT SURGERY LINKED TO SALIVARY DOG-TO-HUMAN TRANSMISSION.
Thommen F, Opota O, Greub G, Jaton K, Guex-Crosier Y, Wolfensberger TJ, Matet A
Retin Cases Brief Rep. 2017 Sep 27
Assessing the danger of self-sustained HIV epidemics in heterosexuals by population based phylogenetic cluster analysis.
Turk T, Bachmann N, Kadelka C, Böni J, Yerly S, Aubert V, Klimkait T, Battegay M, Bernasconi E, Calmy A, Cavassini M, Furrer H, Hoffmann M, Günthard HF, Kouyos RD, Swiss HIV Cohort Study., Aubert V, Battegay M, Bernasconi E, Böni J, Braun DL, Bucher HC, C
Elife. 2017 Sep 12;6
Visualization of hepatitis E virus RNA and proteins in the human liver.
Lenggenhager D, Gouttenoire J, Malehmir M, Bawohl M, Honcharova-Biletska H, Kreutzer S, Semela D, Neuweiler J, Hürlimann S, Aepli P, Fraga M, Sahli R, Terracciano L, Rubbia-Brandt L, Müllhaupt B, Sempoux C, Moradpour D, Weber A
J Hepatol. 2017 Sep;67(3):471-479
Clinical phenotype and outcome of hepatitis E virus-associated neuralgic amyotrophy.
van Eijk JJJ, Dalton HR, Ripellino P, Madden RG, Jones C, Fritz M, Gobbi C, Melli G, Pasi E, Herrod J, Lissmann RF, Ashraf HH, Abdelrahim M, Masri OABAL, Fraga M, Benninger D, Kuntzer T, Aubert V, Sahli R, Moradpour D, Blasco-Perrin H, Attarian S, Gérolam
Neurology. 2017 Aug 29;89(9):909-917
Ochroconis gallopava bronchitis mimicking haemoptysis in a patient with bronchiectasis.
Bernasconi M, Voinea C, Hauser PM, Nicod LP, Lazor R
Respir Med Case Rep. 2017;22:215-217
Identification and Mode of Action of a Plant Natural Product Targeting Human Fungal Pathogens.
Dorsaz S, Snäkä T, Favre-Godal Q, Maudens P, Boulens N, Furrer P, Ebrahimi SN, Hamburger M, Allémann E, Gindro K, Queiroz EF, Riezman H, Wolfender JL, Sanglard D
Antimicrob Agents Chemother. 2017 Sep;61(9)
Potential Use of MALDI-ToF Mass Spectrometry for Rapid Detection of Antifungal Resistance in the Human Pathogen Candida glabrata.
Vella A, De Carolis E, Mello E, Perlin DS, Sanglard D, Sanguinetti M, Posteraro B
Sci Rep. 2017 Aug 22;7(1):9099
Multiplexed nanoplasmonic biosensor for one-step simultaneous detection of Chlamydia trachomatis and Neisseria gonorrhoeae in urine.
Soler M, Belushkin A, Cavallini A, Kebbi-Beghdadi C, Greub G, Altug H
Biosens Bioelectron. 2017 Aug 15;94:560-567
Comparative Genomics of Two Sequential Candida glabrata Clinical Isolates.
Vale-Silva L, Beaudoing E, Tran VDT, Sanglard D
G3 (Bethesda). 2017 Aug 7;7(8):2413-2426
Diversity of Pneumocystis jirovecii Across Europe: A Multicentre Observational Study.
Alanio A, Gits-Muselli M, Guigue N, Desnos-Ollivier M, Calderon EJ, Di Cave D, Dupont D, Hamprecht A, Hauser PM, Helweg-Larsen J, Kicia M, Lagrou K, Lengerova M, Matos O, Melchers WJG, Morio F, Nevez G, Totet A, White LP, Bretagne S
EBioMedicine. 2017 Aug;22:155-163
Simkania negevensis, an Example of the Diversity of the Antimicrobial Susceptibility Pattern among Chlamydiales.
Vouga M, Baud D, Greub G
Antimicrob Agents Chemother. 2017 Aug;61(8)
Exploring viral infection using single-cell sequencing.
Rato S, Golumbeanu M, Telenti A, Ciuffi A
Virus Res. 2017 Jul 15;239:55-68
Importance of whole genome sequencing for the assessment of outbreaks in diagnostic laboratories: analysis of a case series of invasive Streptococcus pyogenes infections.
Tagini F, Aubert B, Troillet N, Pillonel T, Praz G, Crisinel PA, Prod'hom G, Asner S, Greub G
Eur J Clin Microbiol Infect Dis. 2017 Jul;36(7):1173-1180
Identification and Functional Ascertainment of the Pneumocystis jirovecii Potential Drug Targets Gsc1 and Kre6 Involved in Glucan Synthesis.
Luraschi A, Cissé OH, Pagni M, Hauser PM
J Eukaryot Microbiol. 2017 Jul;64(4):481-490
Preventive Strategies Against Cytomegalovirus and Incidence of α-Herpesvirus Infections in Solid Organ Transplant Recipients: A Nationwide Cohort Study.
Martin-Gandul C, Stampf S, Héquet D, Mueller NJ, Cusini A, van Delden C, Khanna N, Boggian K, Hirzel C, Soccal P, Hirsch HH, Pascual M, Meylan P, Manuel O, Swiss Transplant Cohort Study (STCS).
Am J Transplant. 2017 Jul;17(7):1813-1822
Mentor-mentee relationship in clinical microbiology.
Opota O, Greub G
Clin Microbiol Infect. 2017 Jul;23(7):448-453
Project management: importance for diagnostic laboratories.
Croxatto A, Greub G
Clin Microbiol Infect. 2017 Jul;23(7):434-440
Whole-Genome Sequencing Reveals the Contribution of Long-Term Carriers in Staphylococcus aureus Outbreak Investigation.
Gordon NC, Pichon B, Golubchik T, Wilson DJ, Paul J, Blanc DS, Cole K, Collins J, Cortes N, Cubbon M, Gould FK, Jenks PJ, Llewelyn M, Nash JQ, Orendi JM, Paranthaman K, Price JR, Senn L, Thomas HL, Wyllie S, Crook DW, Peto TEA, Walker AS, Kearns AM
J Clin Microbiol. 2017 Jul;55(7):2188-2197
Management: from antibiotic stewardship to clinical microbiology.
Greub G
Clin Microbiol Infect. 2017 Jul;23(7):424-425
Akute und chronische Hepatitis E.
Fraga M, Gouttenoire J, Sahli R, Moradpour D
Ther Umsch. 2017 Jul;74(3):109-113
The Anticancer Peptide TAT-RasGAP317-326 Exerts Broad Antimicrobial Activity.
Heulot M, Jacquier N, Aeby S, Le Roy D, Roger T, Trofimenko E, Barras D, Greub G, Widmann C
Front Microbiol. 2017;8:994
One Year Genome Evolution of Lausannevirus in Allopatric versus Sympatric Conditions.
Mueller L, Bertelli C, Pillonel T, Salamin N, Greub G
Genome Biol Evol. 2017 Jun 1;9(6):1432-1449
Chlamydia trachomatis and chlamydia-like bacteria: new enemies of human pregnancies.
Ammerdorffer A, Stojanov M, Greub G, Baud D
Curr Opin Infect Dis. 2017 Jun;30(3):289-296
Nanomechanical sensor applied to blood culture pellets: a fast approach to determine the antibiotic susceptibility against agents of bloodstream infections.
Stupar P, Opota O, Longo G, Prod'hom G, Dietler G, Greub G, Kasas S
Clin Microbiol Infect. 2017 Jun;23(6):400-405
Determining the analytical specificity of PCR-based assays for the diagnosis of IA: What is Aspergillus?
Morton CO, White PL, Barnes RA, Klingspor L, Cuenca-Estrella M, Lagrou K, Bretagne S, Melchers W, Mengoli C, Caliendo AM, Cogliati M, Debets-Ossenkopp Y, Gorton R, Hagen F, Halliday C, Hamal P, Harvey-Wood K, Jaton K, Johnson G, Kidd S, Lengerova M, Lass-
Med Mycol. 2017 Jun 1;55(4):402-413
Draft Genome Sequences of Two Carbapenemase-Producing Acinetobacter baumannii Clinical Strains Isolated from Albanian and Togolese Patients.
Abdelbary MMH, Prod'hom G, Greub G, Senn L, Blanc DS
Genome Announc. 2017 May 18;5(20)
Unexpected Transcripts in Tn7 orf19.2646 C. albicans Mutant Lead to Low Fungal Burden Phenotype In vivo.
Pierrehumbert A, Ischer F, Coste AT
Front Microbiol. 2017;8:873
Probiotic yogurt and acidified milk similarly reduce postprandial inflammation and both alter the gut microbiota of healthy, young men.
Burton KJ, Rosikiewicz M, Pimentel G, Bütikofer U, von Ah U, Voirol MJ, Croxatto A, Aeby S, Drai J, McTernan PG, Greub G, Pralong FP, Vergères G, Vionnet N
Br J Nutr. 2017 May;117(9):1312-1322
Universal screening and decolonization for control of MRSA in nursing homes: follow-up of a cluster randomized controlled trial.
Héquet D, Rousson V, Blanc DS, Büla C, Qalla-Widmer L, Masserey E, Zanetti G, Petignat C
J Hosp Infect. 2017 May;96(1):69-71
Culture-independent genomics of a novel chlamydial pathogen of fish provides new insight into host-specific adaptations utilized by these intracellular bacteria.
Taylor-Brown A, Pillonel T, Bridle A, Qi W, Bachmann NL, Miller TL, Greub G, Nowak B, Seth-Smith HMB, Vaughan L, Polkinghorne A
Environ Microbiol. 2017 May;19(5):1899-1913
Impact of Tenofovir on Hepatitis Delta Virus Replication in the Swiss Human Immunodeficiency Virus Cohort Study.
Béguelin C, Friolet N, Moradpour D, Sahli R, Suter-Riniker F, Lüthi A, Cavassini M, Günthard HF, Battegay M, Bernasconi E, Schmid P, Calmy A, Atkinson A, Rauch A, Wandeler G, Swiss HIV Cohort Study.
Clin Infect Dis. 2017 May 1;64(9):1275-1278
Pneumocystis jirovecii pneumonia: still a concern in patients with haematological malignancies and stem cell transplant recipients-authors' response.
Cordonnier C, Alanio A, Cesaro S, Maschmeyer G, Einsele H, Donnelly JP, Hauser PM, Lagrou K, Melchers WJ, Helweg-Larsen J, Matos O, Bretagne S, Maertens J, Fifth European Conference on Infections in Leukemia (ECIL-5., a joint venture of The European Group
J Antimicrob Chemother. 2017 Apr 1;72(4):1266-1268
Lausannevirus Encodes a Functional Dihydrofolate Reductase Susceptible to Proguanil.
Mueller L, Hauser PM, Gauye F, Greub G
Antimicrob Agents Chemother. 2017 Apr;61(4)
Human MicroRNA Responses Predict Cytomegalovirus Replication Following Solid Organ Transplantation.
Han SH, Kumar D, Ferreira VH, Egli A, Hirsch HH, Weisser M, Garzoni C, van Delden C, Bochud PY, Manuel O, Meylan P, Boggian K, Husain S, Mueller NJ, Humar A, Swiss Transplant Cohort Study.
J Infect Dis. 2017 Feb 15;215(4):537-546
International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 21 March 2013, San Antonio, Texas, USA.
Greub G
Int J Syst Evol Microbiol. 2017 Feb;67(2):510-511
International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 31 March 2015, New Orleans, USA.
Greub G
Int J Syst Evol Microbiol. 2017 Feb;67(2):512-513
International Committee on Systematics of Prokaryotes Subcommittee on the taxonomy of Chlamydiae. Minutes of the closed meeting, 4 July 2012, Amsterdam, Netherlands.
Greub G
Int J Syst Evol Microbiol. 2017 Feb;67(2):514-515
Simkania negevensis, an insight into the biology and clinical importance of a novel member of the Chlamydiales order.
Vouga M, Baud D, Greub G
Crit Rev Microbiol. 2017 Feb;43(1):62-80
Hepatitis delta-associated mortality in HIV/HBV-coinfected patients.
Béguelin C, Moradpour D, Sahli R, Suter-Riniker F, Lüthi A, Cavassini M, Günthard HF, Battegay M, Bernasconi E, Schmid P, Calmy A, Braun DL, Furrer H, Rauch A, Wandeler G, Swiss HIV Cohort Study.
J Hepatol. 2017 Feb;66(2):297-303
Lassa Virus Cell Entry Reveals New Aspects of Virus-Host Cell Interaction.
Torriani G, Galan-Navarro C, Kunz S
J Virol. 2017 Feb 15;91(4)
Rapid adaptation drives invasion of airway donor microbiota by Pseudomonas after lung transplantation.
Beaume M, Köhler T, Greub G, Manuel O, Aubert JD, Baerlocher L, Farinelli L, Buckling A, van Delden C, Swiss Transplant Cohort Study.
Sci Rep. 2017 Jan 17;7:40309
Single-virus tracking uncovers the missing link between HIV integration site location and viral gene expression.
Ciuffi A, Cristinelli S, Rato S
Nat Struct Mol Biol. 2017 Jan 5;24(1):8-11
ESCMID postgraduate education course: applications of MALDI-TOF mass spectrometry in clinical microbiology.
Greub G, Moran-Gilad J, Rossen J, Egli A, ESCMID Study Group for Genomic and Molecular Diagnostics (ESGMD).
Microbes Infect. 2017 Sep - Oct;19(9-10):433-442
Methods for Real-Time PCR-Based Diagnosis of Chlamydia pneumoniae, Chlamydia psittaci, and Chlamydia abortus Infections in an Opened Molecular Diagnostic Platform.
Opota O, Brouillet R, Greub G, Jaton K
Methods Mol Biol. 2017;1616:171-181
Messages from the first International Conference on Clinical Metagenomics (ICCMg).
Ruppé E, Greub G, Schrenzel J
Microbes Infect. 2017 Apr - May;19(4-5):223-228
Simkania negevensis may produce long-lasting infections in human pneumocytes and endometrial cells.
Vouga M, Baud D, Greub G
Pathog Dis. 2017 Jan 1;75(1)
Genome of the carbapenemase-producing clinical isolate Elizabethkingia miricola EM_CHUV and comparative genomics with Elizabethkingia meningoseptica and Elizabethkingia anophelis: evidence for intrinsic multidrug resistance trait of emerging pathogens.
Opota O, Diene SM, Bertelli C, Prod'hom G, Eckert P, Greub G
Int J Antimicrob Agents. 2017 Jan;49(1):93-97
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Rue du Bugnon 48
CH-1011 Lausanne, Suisse
+41 21 314 4056